rs47697048 SNP Detail

Summary

• ID
  rs47697048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83300109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG AGAGTGACCA CCCTCTACTC
  Y
  GTCCTTCAGG GGTGGAAGAG CAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132468879	ENSMUSSNP2755285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323767081	CHEV_11_83222785	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47697048					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83300109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	within coordinates
Gm72478	predicted gene, 72478	within coordinates
Rasl10b	RAS-like, family 10, member B	within coordinates
Rr452947	regulatory region 452947	136 bp distal
Rr452948	regulatory region 452948	within coordinates
Rr452949	regulatory region 452949	800 bp proximal
Rr452950	regulatory region 452950	935 bp proximal
Tssr103692	transcription start site region 103692	within coordinates
Tssr103693	transcription start site region 103693	372 bp upstream
Tssr103694	transcription start site region 103694	437 bp upstream
Tssr103695	transcription start site region 103695	453 bp upstream