rs47697759 SNP Detail

Summary

• ID
  rs47697759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58892404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGA TAACAAGAGA TGGACCCTGG
  Y
  GCCCTAGTCG GGGCCCTTCA AGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132221291	ENSMUSSNP5467519	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47697759					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58892404 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1332 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	1342 bp upstream
Tssr101783	transcription start site region 101783	1379 bp upstream
Tssr101784	transcription start site region 101784	1396 bp upstream
Tssr108189	transcription start site region 108189	604 bp downstream
Tssr108190	transcription start site region 108190	620 bp downstream
Tssr108191	transcription start site region 108191	777 bp downstream
Tssr108192	transcription start site region 108192	796 bp downstream
Tssr108193	transcription start site region 108193	813 bp downstream
Tssr108194	transcription start site region 108194	843 bp downstream