rs47698231 SNP Detail

Summary

• ID
  rs47698231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100827797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCTCTG CCCCAGGGAG
  TATTGCTTGA ATACAGTTGT AGGCATTGCT ACTCATGGAT GGTGACGAGA AATGACCACA
  GACCTATTCC TTGCCGGTAA GACTTGAGGA GACTTGAGGA AAGGCTTGCG AAGATAACTT
  CCAAGAAAGA GCTCTTCAGG TTTGTGAAGA AAGCACTCAT CTTCTTCCTC TGATTGCTGC
  Y
  GGATCTCAAT GAATCGATAG ACCAGTTGTA GCCATCACGT GCCCAGGCCA AGAAGGGAGC
  CAGCACTACA GACATCGGGA CAGAGAGGGA GAAAGAAGAT GGGCCCCTGC TGACATGCTC
  AGCTGTCCAA CCCTACCTCA CTTCAACAAC TCCGTTTGTG GGGTTATAAA TGTCCTCATT
  TAGAGGCTTC TGCTACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61203479	NES16713863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47698231					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61203479	NES16713863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100827797 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	within coordinates
Rr378347	regulatory region 378347	within coordinates
Rr615545	regulatory region 615545	within coordinates
Tssr52114	transcription start site region 52114	138 bp downstream