rs47699369 SNP Detail

Summary

• ID
  rs47699369
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:81913078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT TGGCTGGCCA GCAAGCCTCG
  M
  GATCCTTCTG TGTCCTCTCA AACCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148229776	ENSMUSSNP6912495	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325033194	CHEV_15_81859307	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47699369					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81913078 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr506381	regulatory region 506381			735 bp distal
Rr506382	regulatory region 506382			1684 bp proximal
Tssr132336	transcription start site region 132336			831 bp downstream
Tssr132337	transcription start site region 132337			802 bp downstream
Tssr132338	transcription start site region 132338			783 bp downstream
Tssr132339	transcription start site region 132339			744 bp downstream
Tssr132340	transcription start site region 132340			365 bp downstream
Tssr132341	transcription start site region 132341			326 bp upstream
Tssr135523	transcription start site region 135523			1017 bp upstream
Tssr135524	transcription start site region 135524			709 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			Intron
				Noncoding-Transcript-Variant