rs47699597 SNP Detail

Summary

• ID
  rs47699597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130487180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CCCCCTGTGT GGCACAACTC
  K
  GTGGGGTGGG TCCTGGACCA CAGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135897809	ENSMUSSNP2284831	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320966017	CHEV_3_130396449	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47699597					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130487180 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	816 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	507 bp upstream
Rr585191	regulatory region 585191	1384 bp distal
Rr585192	regulatory region 585192	1974 bp distal
Rr585193	regulatory region 585193	1741 bp distal
Rr585194	regulatory region 585194	595 bp proximal
Rr585195	regulatory region 585195	682 bp proximal
Rr585196	regulatory region 585196	1210 bp proximal