rs47700800 SNP Detail

Summary

• ID
  rs47700800
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34923272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTATGTAT AAAGCAACTC ATATATTTGT GCGTTTGAAA
  AGGTTTATTT ATTGATGTGT TCTATGTATG AGTATTTGCC TCCATGTATG TGTCTGCACC
  G
  TGTGTATACA ATGGTCACAA AGGACAGAAG AGGGAGTAAG ACCCTCCCAC AACTGGAGTT
  ACAAATGTAT TGAGCTGCTG TGTGAGTGCT TGGAACCTA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149109311	ENSMUSSNP4054856	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47700800					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34923272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	416 bp distal
Gm39159	predicted gene, 39159	282 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	800 bp upstream
Rr400818	regulatory region 400818	489 bp downstream
Rr662016	regulatory region 662016	333 bp distal