rs47701724 SNP Detail

Summary

• ID
  rs47701724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTGTG GCTTTTGAGT
  CACCGTTCAT CCTGGGTTTT CTCCGGTAAG GTGATAGAGT TATATTTTCC CTCCTGTCCA
  GTCGCTTTTC TTTTACCTTC TGTAAAATCT TCTGCAGGGT ATGCTACCCA TGAATCCCAA
  TGTGCTAGTA AAAGTACAAA GTTGTTCATA CAGCCACCGG TAGTGCTGGG ATATTCTAAA
  R
  CCTCCTAGTG CTAGACGTGC ATGGTTGTGA ATCTCCTGCC AGTGTGGGCA TCAGCTTGTG
  GTAGGCTTCT AGAGTCAGCT CCTACCACCT CTGAAGTCAG TTGTTTGATA TTCGGAAATT
  TTGAGAGCTA GGTAACTGTT GATAACTTCC CACCAGCCCA TTGTGAGTGT TTACACCACA
  GGAATAGAAA AATCACTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460811	NES16446456	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47701724					SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460811	NES16446456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591129 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1958 bp distal
Rr516711	regulatory region 516711	414 bp distal
Rr516712	regulatory region 516712	574 bp proximal
Rr516713	regulatory region 516713	1651 bp proximal
Tssr138713	transcription start site region 138713	143 bp downstream
Tssr141326	transcription start site region 141326	1987 bp upstream
Tssr141327	transcription start site region 141327	1964 bp upstream
Tssr141328	transcription start site region 141328	944 bp upstream
Tssr141329	transcription start site region 141329	24 bp downstream
Tssr141330	transcription start site region 141330	39 bp downstream
Tssr141331	transcription start site region 141331	52 bp downstream
Tssr141332	transcription start site region 141332	80 bp downstream
Tssr141333	transcription start site region 141333	915 bp downstream
Tssr141334	transcription start site region 141334	1070 bp downstream