rs47701842 SNP Detail

Summary

• ID
  rs47701842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CACCAGCTTT CTGGAAGAAC TTTAAGAAAT CAGTCACTTT
  TTTTCTAGAG TCAAATTTAA AAACCTTGAA CCTCTTACGT AATCAAAATG TATGCCCCCC
  M
  CCCCCACCTC TTGGGGAACG TGTTATAGTA ATTCCTGATT GCATGCCTTA GTTATTAGCA
  TTATTTACCT TTCTGCATAC CACAGTAGAA GCAAATTCAG A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146651353	ENSMUSSNP5274726	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47701842					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551106 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr557685	regulatory region 557685	within coordinates
Rr557686	regulatory region 557686	346 bp proximal
Rr557687	regulatory region 557687	1602 bp proximal
Rr557688	regulatory region 557688	1871 bp proximal
Tssr24212	transcription start site region 24212	1769 bp downstream
Tssr24213	transcription start site region 24213	1874 bp downstream
Tssr24214	transcription start site region 24214	1908 bp downstream