rs47702254 SNP Detail

Summary

• ID
  rs47702254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACAATAAA GAATTGTCCA CGGAGCCTGC
  AGGAAACACT GCCTGGGCTG CAAGGAGGGG ACCAGTTGGA ATGAATGAGC CAGGATCAGA
  GCCGGGGCGG GGCGAAGAGA AGCGCACAGC CTTGAATGCT AGCTTTGGGC GCGCACGGgt
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgGGGTGATG ATGGCAAGAC
  CCCAGCCCAA GAGGTCTTTG CCTTTGGATA TTAGAATTTC CCTGGCGAGC TGCAAGGAAG
  AGTGGAAGAG ATTTGGGTGC TTCCCGAGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147119763	ENSMUSSNP6544092	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320439901	CHEV_2_102499853	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47702254					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	4 bp upstream
Rr561713	regulatory region 561713	1027 bp distal
Rr561714	regulatory region 561714	884 bp distal
Rr561715	regulatory region 561715	405 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1457 bp downstream
Tssr19099	transcription start site region 19099	1385 bp downstream
Tssr19100	transcription start site region 19100	1116 bp downstream
Tssr19101	transcription start site region 19101	1027 bp downstream
Tssr19102	transcription start site region 19102	1001 bp downstream
Tssr19103	transcription start site region 19103	954 bp downstream
Tssr19104	transcription start site region 19104	932 bp downstream
Tssr19105	transcription start site region 19105	862 bp downstream
Tssr19106	transcription start site region 19106	844 bp downstream
Tssr19107	transcription start site region 19107	824 bp downstream
Tssr19108	transcription start site region 19108	788 bp downstream
Tssr19109	transcription start site region 19109	746 bp downstream
Tssr19110	transcription start site region 19110	464 bp downstream