rs47702355 SNP Detail

Summary

• ID
  rs47702355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30330679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGCCTC TAAGAGGGAA
  GGAGCCTGGG GCTGGGGTAG GAGCACAGCA CTTTGGGATG CATACCCTGC CTTTTCAACA
  CTAATCGGTG GGGAGAGTTA GCTGCAAGAG TCAGATAACT GCCTTCGGGA CTGACGAGGT
  ATCAGACTTC GGTGTCTCCA TACTTTGTGT ACTGGAGAAA TGCTGGACAA ACTGTCACTG
  Y
  GCTGCATCCC CAATTCTACC TTTACATTTT TAAAGTTTGA GGCAGGGTCT TGTTGTTAAG
  TTACCCAGCA GGTCATGAAC TTGTAACCTT GCTGCTTGAG AGTCCCGAGG ACACAGGATT
  AGAAACCCAG GGCACCACAA TTGGCTGGCA ATAAGCACTG GGCATTGGTG CTCATTTTAT
  CTGATGGGTT CCTTGGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709017	NES15548877	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47702355					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709017	NES15548877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30330679 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	within coordinates
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	878 bp distal
Rr292185	regulatory region 292185	within coordinates
Rr404042	regulatory region 404042	672 bp downstream
Tssr4363	transcription start site region 4363	948 bp upstream
Tssr124839	transcription start site region 124839	799 bp downstream
Tssr127873	transcription start site region 127873	918 bp upstream
Tssr127874	transcription start site region 127874	901 bp upstream
Tssr127875	transcription start site region 127875	898 bp upstream
Tssr127876	transcription start site region 127876	423 bp downstream