rs47703196 SNP Detail

Summary

• ID
  rs47703196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164147405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCACCAT TCCCGTCCCC
  TTGCCGGTGA AGTGTTCTAG AACGGCAAGT GTGAGCCAGG GGGGCTTCTG GAGCACCGCG
  CCTAGATCCT AGCTGGACAC AGGGAAGGAT ATCTGCGGGG AGGAAGCAGG ATAAGGGCTG
  AATTACAAAG GTGTGGGCAG ATAGAGAAAC TGACAAGGAG CTGCAGGCAT CAGGAGGAGG
  R
  ACTGGCAAGA GCAGAGAGCT TATCAGGGTG CAAGAGAACT GCCAGAGACT GGCTAGTGTC
  TGACAGGAGC TGTGGCTTCA GCGGAGCTCA GCAACTAAAC AGAATCTGAC TGGGAGCTCG
  GAATGTAAAC ATCTCACCCC AGTGTTCTTC CTTGATCCAG CCGTTGTCTC CTCCCAGCAA
  ATCCATGTGA AAGATGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60337902	NES15841656	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47703196					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337902	NES15841656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164147405 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422185	regulatory region 422185			within coordinates
Rr422186	regulatory region 422186			906 bp proximal
Rr422187	regulatory region 422187			1458 bp proximal