rs47706376 SNP Detail

Summary

• ID
  rs47706376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52465000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGTATCT TGTACATTAT GTTCACAGGC
  TTAGAGTCTT CTCCACCACC GATGTCTATG TAGGCTCTTG ACAGAATGAG CTGGCCATGC
  TGTGACTCAA CTACTCTATG AATACTTTAA AAGTTACCTC TGTGAGAATC ATGTAGGGCT
  M
  TTTTGTCTTG AATTTCAGCT TCCTGACACT CACCCTTGAA TGTTCCCACC TTTCCTTTGC
  TCCTGTACAT CATTTTTAAC TTTTTGCACA TCCCCTGTAC AGCTTTCCTT GGTGACTCCC
  CCCATTTTAC TCCCATTGTC CAACCAAGTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60733176	NES16376433	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	C		C
ss319720154	CHEV_1_52482685	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47706376					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60733176	NES16376433	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52465000 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	1578 bp upstream