rs47708679 SNP Detail

Summary

• ID
  rs47708679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136390937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTGTTTGG GCTTATGGGC TTGCTCTGCC ATGCTCAGCT
  TATGGGATGT TGGGGACTGA AGCCAGGGTT GCCTGAATGC CAGACAAGCA TGATACCAAC
  Y
  GAGCCGAATC ACTACTCTAT CCGTTAGTTA TTGAGCTTAG CTTTACTCGT ACTTGACCCT
  TATGAATACA TGAAGTCTGG AACTATTTAT TGTGAAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135937040	ENSMUSSNP5577397	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320974512	CHEV_3_136348140	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47708679					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136390937 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			272 bp distal
Rr585843	regulatory region 585843			1426 bp proximal
Tssr31878	transcription start site region 31878			275 bp downstream
Tssr35850	transcription start site region 35850			509 bp upstream