rs47709969 SNP Detail

Summary

• ID
  rs47709969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:28312852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTGTTA CTTCACAGGC
  ACAAGCCTCA GTGTGTGTTA TTGAGGACTC TTATCTCCAC GTCAGCTCAT CTCTGCTTCT
  GTTTTTCACC AGCCTCAGTC ATCCTCGTCC CATCTGGAAA TTTGCACATG TTTCTTCTTT
  CTTCACATTT CCAATAACTC TTCCTATCTC AAGCCACCTT TCCTGAGTTA ATGCAACAAT
  R
  GCCTCACCCT CACTTCCTGA TAAGAAATCA GACCAACAGG TGTCTGAGAA GATCTGAGGA
  GGATACCACT GAGCAGCAGG GACAGAGGAC CTGGGACCTT CTGACCAGGC TCAGCTTATA
  TCCTCACCCC TAAACAAGAT ACAGGTTCGG TGACAAGAAG TTCTAAGCAC AGGATCTCAT
  TGTCACCATA CAGGGTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136237834	ENSMUSSNP3863181	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47709969					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:28312852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21517	CpG island 21517	1298 bp proximal
Opcml	opioid binding protein/cell adhesion molecule-like	within coordinates
Rr206121	regulatory region 206121	1348 bp proximal
Tssr84179	transcription start site region 84179	1739 bp upstream
Tssr84180	transcription start site region 84180	1924 bp upstream
Tssr84181	transcription start site region 84181	1957 bp upstream
Tssr84182	transcription start site region 84182	1982 bp upstream