rs47713146 SNP Detail

Summary

• ID
  rs47713146
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:35501020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTTATAA ATAAGGCATC
  TCAGTGAGAT GTAAGTGACT TACCCAAGGT TACATGGCTG TTAGTGGCAG AGCCAGTGTC
  TTTCCAATCA ATTTCTGAAA CAGATAGTCT CCTGGATCGA TATTCACAAT CCAGCTGTGG
  CCAAGAAGGA AATAAACACC ATCAAACACG TCTCTCCATT GGCGGGCGAA ACACAGTAAC
  K
  TATTTCGGCA GTGAAGAAAC TTCCAATACT TAACATTGAA AAGAAATTTC GGAAAGCTGT
  TCATGCAATG TAATTGTGTG AGGCAAATTT ACATAATTTA CTTAACAAGT AGAGGATTTT
  GCAGAAGCTA AAACAAATCA GCCTGGAAAA CTTCTAACAA TTGTATATTT TAAACCTCCC
  CCTCCATGTA AGTAATTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60995114	NES16129111	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs47713146					SNP	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60995114	NES16129111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35501020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18877	CpG island 18877	778 bp proximal
E130304I02Rik	RIKEN cDNA E130304I02 gene	997 bp upstream
Gm73276	predicted gene, 73276	1591 bp downstream
Rr645475	regulatory region 645475	591 bp proximal
Rr645476	regulatory region 645476	1008 bp proximal
Rr645477	regulatory region 645477	1384 bp proximal
Tssr72060	transcription start site region 72060	1373 bp downstream
Zfp507	zinc finger protein 507	Intron