rs47716223 SNP Detail

Summary

• ID
  rs47716223
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172185621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA CCTAGAACTC ACTTTGTAGA
  T
  CAGGCTGGCC TCGAACTCAG AGATC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148313908	ENSMUSSNP6382611	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47716223					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172185621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	1614 bp proximal
Fam210b	family with sequence similarity 210, member B	1864 bp upstream
Rr48055	regulatory region 48055	1621 bp distal
Rr56171	regulatory region 56171	1179 bp proximal
Tssr21944	transcription start site region 21944	1878 bp upstream
Tssr21945	transcription start site region 21945	1894 bp upstream
Tssr21946	transcription start site region 21946	1927 bp upstream
Tssr27939	transcription start site region 27939	1969 bp downstream