rs47716870 SNP Detail

Summary

• ID
  rs47716870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68830446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTCTC TCATAGATAA
  ATATCTCACT TTTATATGAA ATGATTTTCA TTCTCCTTAG CAATGCCTGT AGAGAAGGGC
  AGACCTTAGA TCTCAGCTAG AAAATCCTAG TCTGTAGGAA AGGCATGGAT AAATTCTCCC
  CACTGTGGAT GGACATTCTA GACATATAAG AACTCTATCA CCACTTGCCA ACACAGAGCC
  R
  TCACCTCAGC TCCTCACCTC TTGGCCTCAG ATTGTTACTT ATTTTATTGG CTTTAGAGGG
  GTTGGGTGCT AAGCTATCTG GTGTGGACCT GTTAGACACA TTCCCCTAGG CCTCAAGATG
  TGGCTGTTTT TCTTTTACAC TGAATTTACT TCTGAGTTCA CCAGGCAGAG TTCTTGCTGC
  AGGGTTGAAA CACAGTAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62443700	NES17255339	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47716870					SNP	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443700	NES17255339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68830446 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	419 bp proximal
Tssr126359	transcription start site region 126359	1297 bp upstream