rs47717003 SNP Detail

Summary

• ID
  rs47717003
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128516367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG GCCACAGGTC CTGCCTAGAC
  G
  CTCATTCACA TGAAACAAAC AAACA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145462189	ENSMUSSNP5848251	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss319965153	CHEV_1_130485207	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47717003					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128516367 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	767 bp distal
Rr28453	regulatory region 28453	233 bp proximal
Tssr195	transcription start site region 195	1689 bp upstream
Tssr13461	transcription start site region 13461	168 bp upstream
Tssr13462	transcription start site region 13462	within coordinates
Tssr13463	transcription start site region 13463	70 bp downstream
Tssr13464	transcription start site region 13464	127 bp downstream
Tssr13465	transcription start site region 13465	145 bp downstream
Tssr13466	transcription start site region 13466	210 bp downstream
Tssr13467	transcription start site region 13467	257 bp downstream
Tssr13468	transcription start site region 13468	346 bp downstream
Tssr13469	transcription start site region 13469	399 bp downstream
Tssr13470	transcription start site region 13470	494 bp downstream
Tssr13471	transcription start site region 13471	563 bp downstream
Tssr13472	transcription start site region 13472	632 bp downstream
Tssr13473	transcription start site region 13473	645 bp downstream
Tssr13474	transcription start site region 13474	701 bp downstream
Tssr13475	transcription start site region 13475	725 bp downstream
Tssr13476	transcription start site region 13476	742 bp downstream
Tssr13477	transcription start site region 13477	803 bp downstream