rs47717421 SNP Detail

Summary

• ID
  rs47717421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGATCAG GATAAAATTA
  GGCAAACTTT AGAATGTCCG TGGGGGTCTA GGGGGAGTAT GATAAAGAGG CACAAAAGTT
  CCTGGGAGGA AACGAGCTGC AGGTGGCCAC ACTACCGTTT CCCAAAAGAT TCCAGGACAA
  AAAAAGCACT GCACGCCTCT CCTTTGGAGA ACCAAGTAGC CCTGGAGTCT CGCAGCCCCT
  R
  TTCCTGTACA GCTAATGAGC TTGCCTTTGA AAGGAGTCAG CCACATGCAC ACTAGGGAGA
  GTTCCCTCGT CGCCTCCCCC AGAATCCAAA CACATCTCAA CTTCAGTCCT AGCTGATTCA
  GAGCTGCCCT CCCCCCAGGA GACCCTGACC CCACAGTCCT CCTTCACTCA CTTGTCCAGT
  ACGAAGTACA AATCGAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199550	NES16709293	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47717421					SNP	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199550	NES16709293	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178085 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	150 bp proximal
Gm42759	predicted gene 42759	424 bp upstream
Rr615102	regulatory region 615102	1903 bp distal
Rr615103	regulatory region 615103	726 bp proximal
Tssr1554	transcription start site region 1554	726 bp downstream
Tssr47433	transcription start site region 47433	469 bp upstream
Tssr47434	transcription start site region 47434	499 bp upstream
Tssr47435	transcription start site region 47435	869 bp upstream
Tssr47436	transcription start site region 47436	1038 bp upstream
Tssr47437	transcription start site region 47437	1073 bp upstream
Tssr51988	transcription start site region 51988	344 bp downstream
Tssr51989	transcription start site region 51989	391 bp downstream
Tssr51990	transcription start site region 51990	404 bp downstream
Tssr51991	transcription start site region 51991	501 bp downstream
Tssr51992	transcription start site region 51992	571 bp downstream
Tssr51993	transcription start site region 51993	744 bp downstream
Tssr51994	transcription start site region 51994	768 bp downstream
Tssr51995	transcription start site region 51995	911 bp downstream
Tssr51996	transcription start site region 51996	1071 bp downstream
Tssr51997	transcription start site region 51997	1109 bp downstream
Tssr51998	transcription start site region 51998	1149 bp downstream
Tssr51999	transcription start site region 51999	1184 bp downstream
Tssr52000	transcription start site region 52000	1205 bp downstream
Tssr52001	transcription start site region 52001	1225 bp downstream
Tssr52002	transcription start site region 52002	1245 bp downstream
Tssr52003	transcription start site region 52003	1287 bp downstream