rs47719543 SNP Detail

Summary

• ID
  rs47719543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84413977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTCCTCCC ACTTACTAGG TAAGCCCCAC CTACACTCTG
  CAGAGTAATC TGCTTGGGAA GGCTTAAATG TTAATCCTAT TAAAAACACC TTTATAGAAA
  Y
  GGCCAAGATA TTTGACCGAA TATCTGGGTA CCCGGTGTCC CTGTCAGGTT GACATACAAA
  GCAGAACTGC CCAGGAGTCA TATAAGAAAG CGGATGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146130445	ENSMUSSNP4056628	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47719543					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84413977 () rs orientation: forward

Symbol	Name	Function Class
Rr531986	regulatory region 531986	1892 bp distal
Tssr146028	transcription start site region 146028	1633 bp upstream
Tssr149629	transcription start site region 149629	123 bp upstream