rs47721850 SNP Detail

Summary

• ID
  rs47721850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46813319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTTCCC TGCCTACCCT
  AAACAGCAAG TTTCTGGTAG CAGCAGAATG GCCTGGTGAC AGGCTGGGAC CATGGGGGCT
  GGGCATGTGC TACATCTTTA GCATCTTTAG AGCATGCAGC CTACTGGTCA CCTTTCCCAG
  TTCACAGATG GAAAGCGAAG TCGACACAAG GAAGAGGCAT AATCTCGAGC AGAGACTAAG
  R
  GCTGGGTTTG TTGCTTTTAT GAACCTTTCA GAGACTCCAG GCCCGTTCCC CTCCATCCCA
  CATTTCTCAT TGGCTAGGAA AGAGATTCTC AGGGACATTC TCCAGGACAA ATCTGCACCC
  CCTTTGCATG CTGGGAAGGA TAAACATTAG TAAGGAGGTT GAGGTCAAGG AGCCTCGCAA
  AGCAACACAG GGAAAGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss139387237	ENSMUSSNP3388953	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324590209	CHEV_14_47195537	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47721850					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46813319 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491232	regulatory region 491232	1900 bp distal
Rr491233	regulatory region 491233	26 bp distal
Rr491234	regulatory region 491234	within coordinates
Rubie	RNA upstream of Bmp4 expressed in inner ear	11 bp upstream
Tssr128285	transcription start site region 128285	7 bp upstream