rs47722268 SNP Detail

Summary

• ID
  rs47722268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125567132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACTTTCTT TTTGCACCTC CACATTTGGC AAACACGAAA
  GGAATGGCTA AATCAGAACT CATATACCCG GAACCTAGGG AGACAGGATC AGGGGAGTGG
  R
  AGGTGGGAGG AGGAGGGAGT AAGACTGAAA AAATCCGCTA GTACCTCTAC TGCTACGCAT
  GCTTCTCTTT CATCTCTGCC TTCTCCTCTG GGTCCCACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147486067	ENSMUSSNP3310974	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320497840	CHEV_2_125550948	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47722268					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125567132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	1578 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	424 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	382 bp proximal
Rr367290	regulatory region 367290	474 bp downstream
Shc4	SHC (Src homology 2 domain containing) family, member 4	1064 bp upstream
Tssr26008	transcription start site region 26008	1675 bp upstream
Tssr26009	transcription start site region 26009	1521 bp upstream
Tssr26010	transcription start site region 26010	1489 bp upstream