rs47722428 SNP Detail

Summary

• ID
  rs47722428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT CTCCTCCCAG AACCACCCCC
  R
  TCCTATTCCA GCTCACCGAC TCCGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137051599	ENSMUSSNP4104953	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss323224493	CHEV_9_119978322	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47722428					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898270 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	Intron
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	1457 bp proximal
Tssr92011	transcription start site region 92011	913 bp upstream
Tssr92012	transcription start site region 92012	903 bp upstream