rs47722577 SNP Detail

Summary

• ID
  rs47722577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGTAGTG GGATCAAAAC GAGCTATTTC GGGCCCCGGC
  GCGCAGCCCC CGGGGGCCAA CCTGGAGTGT TCATGCTCAT GCCCCCTGGC CGCTGAGCAC
  Y
  CCAGGCTGAG TCAGAGGCAC AGAATTAGGC CCGACCTACT CTGGGGTAGG GTCTGTTCTG
  TGTCCTCCTG ACTGCCTGGC ATGGGTGCAG CATTCTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682288	ENSMUSSNP60670	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss322135208	CHEV_7_31337843	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47722577					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	173 bp distal
Cpgi18809	CpG island 18809	367 bp proximal
Cpgi18810	CpG island 18810	1402 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Mir9769	microRNA 9769	4 bp upstream
Proser3	proline and serine rich 3	525 bp upstream
Rr400242	regulatory region 400242	332 bp downstream
Tssr65779	transcription start site region 65779	260 bp downstream
Tssr65780	transcription start site region 65780	439 bp upstream
Tssr65781	transcription start site region 65781	469 bp upstream
Tssr65782	transcription start site region 65782	1948 bp upstream
Tssr71787	transcription start site region 71787	508 bp upstream
Tssr71788	transcription start site region 71788	449 bp upstream
Tssr71789	transcription start site region 71789	1841 bp downstream
Tssr71790	transcription start site region 71790	1953 bp downstream