rs47722875 SNP Detail

Summary

• ID
  rs47722875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43671675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAGAGA AAGGTAGGTG
  CTCTTGTGGT CTTTTGTCTC CTTGGACGTA AGCCAAACTC CTCTAAGGCA GAGGGATGGG
  TGTCGGCTGC CTCTACTCAA CTTCTGTGCC TTGTAGAGAT CCGCTTGTTT ACAAGGTTGT
  GTGGGCAAAT AGTGGCAGGC AGAGGGTATT ATTGATTGTT TTGAGTTTGT TTGCCTTTGG
  Y
  TAGAGGATAG CAACCCATAT AAGTGCATGA AGCACAAGGT CTGATTCTTG TTTTCTTTGG
  AGGAACCTCT CGTTAGAGGT TATGTGTTTT GGCTTCTGTG TGATGAAGGG GGAAATATTT
  GTGGGCTGAC TTGTCCTTTT GTCTTTTCCC TACTGTGCAA ACCTCGACCA TAATTGTTTT
  AATCCACTTT CAAGTTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62737772	NES17343021	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47722875					SNP	C	C	T	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62737772	NES17343021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43671675 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	within coordinates
Rr527086	regulatory region 527086	323 bp distal
Rr527087	regulatory region 527087	within coordinates
Rr527088	regulatory region 527088	1652 bp proximal
Tssr144671	transcription start site region 144671	754 bp downstream
Tssr144672	transcription start site region 144672	448 bp downstream
Tssr144673	transcription start site region 144673	402 bp downstream
Tssr144674	transcription start site region 144674	375 bp downstream
Tssr144675	transcription start site region 144675	328 bp downstream
Tssr148115	transcription start site region 148115	567 bp downstream