rs47724236 SNP Detail

Summary

• ID
  rs47724236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTACGA GGAGGCTGTA
  TGCTCAACCC ACCTCTGAGT TATTCTATCC CCGGGGGTAA AAAGACTGTC TGGAAGCCTG
  CCGTGCTAGG ATCTGACTCG CTCTGGTGGC ATTGCTGCGC TCAGGGTTCT GGGTATCCGG
  GAGTCAGTGC AGTGACCAGG TAAGAAGCCC AAGGGCAGGG AAGGGCTTGT GATGGTGTCA
  S
  TGGGCTACTG CGGGGACGTG GGAGCGTGGT CCTCAAGGTG GGTGGGCTGG AACCACAACG
  TTCAAGTGTT TGGCTCAGGA CTCACCTCGG AGCTCCCCAG AAACTGGCTC CAGAATTGTT
  GCGTGGAGGG GAGGGGTTGC TTCTGAGAAA GCCACCCTAA GAATTCAGAA TTGAGGGGGC
  GGAAGCTGAA CCCAGTGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62747666	NES17340461	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47724236					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747666	NES17340461	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	337 bp distal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	549 bp distal
Rr527122	regulatory region 527122	within coordinates
Tssr144685	transcription start site region 144685	823 bp downstream
Tssr144686	transcription start site region 144686	691 bp downstream
Tssr144687	transcription start site region 144687	671 bp downstream
Tssr144688	transcription start site region 144688	525 bp downstream
Tssr144689	transcription start site region 144689	370 bp downstream
Tssr144690	transcription start site region 144690	335 bp downstream
Tssr144691	transcription start site region 144691	287 bp downstream
Tssr144692	transcription start site region 144692	236 bp downstream
Tssr144693	transcription start site region 144693	189 bp downstream
Tssr144694	transcription start site region 144694	152 bp downstream
Tssr144695	transcription start site region 144695	124 bp downstream
Tssr144696	transcription start site region 144696	85 bp downstream
Tssr144697	transcription start site region 144697	568 bp upstream
Tssr148130	transcription start site region 148130	299 bp upstream
Tssr148131	transcription start site region 148131	1120 bp downstream
Tssr148132	transcription start site region 148132	1143 bp downstream