rs47724262 SNP Detail

Summary

• ID
  rs47724262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151851317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCGTATGT ATTTGGGCCA AGTCTAACGC
  TGAAGCGATA ACCACATGCT AGGGAAGTAT TTAGTCtgct gttggtttat atgtggcatc
  tcctccatgg gttcctgtgt ttggtcactt gattgttctg gaaggctgtg gaacactcag
  R
  tggagtagta ttgaaagagg taggttgctg gagggcaggc cctaaggctt gacagcctgc
  tccacttcct gtctgatctc tgcttcctgc tgcatcaatt atcagggata cacgtgtcat
  cccgggactg cccagggcct tcctcttcag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145725019	ENSMUSSNP3473475	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320061195	CHEV_1_153822696	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47724262					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151851317 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	277 bp distal
Rr420391	regulatory region 420391	within coordinates
Rr420392	regulatory region 420392	1952 bp proximal