rs47724585 SNP Detail

Summary

• ID
  rs47724585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111861329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTAATA TATAATCTAT
  CACTTTTATT ATCTAATATA CCGGTACCAT TTAAGAAACA AAAATACCCT AAGTTTATCT
  CTTCAAATTT CCAATTGTCA GTTATAGACC TCTTTTTAGT CTATCTCATT AGCTTCTGTA
  AAGGAATTTT AATCCAGCAA CATGACTGCT CTGATCACAT CCAAAGCCTT CTAGGTCTGT
  R
  TGATTTGGCT GAAATGCAGA CACATCAGTA CCACACAAAT TTAATCCCCC TGGTTGTAAT
  CCTTTAACAC ACACTGTTGA TCCCAAACAA TAATGTATAA CTGAGGGGAA GACAAAGTGA
  AGAATCTGAG AAAATTTTCA CAGAATGAGG CAGAGATAGA ATATGCCCAA CTCTCAGGAG
  AAAAGCTATT TAAGTGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134277797	ENSMUSSNP6621843	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325913368	CHEV_X_110065241	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47724585					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111861329 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	1329 bp distal
Rr6449	regulatory region 6449	1577 bp distal