rs47724885 SNP Detail

Summary

• ID
  rs47724885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145766045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTTTGAA CTGGGTATAG
  TAGGCGCTGG AACGCGTCCC TCACAGATGG GAGTATCCCT GCTTTGTTAG CTGATTGAGC
  CTTGTACACA GCTTCTTGAA GTCGAGGTCA TGACCCCGCA TCACATCTGA GCCCGTGATG
  GAGAAGACTC TGTGGTTCCT TTAAACTGTT TGTTTGGACA CCAAGGGGAA ACAAACGTGC
  W
  ATGTTTTAAA AATGCCCCTA AATCTAGATT CCCCTTCTTT TCTCCAGCAC AGGCCTAAAT
  ATTTCTTCTC CAGCTGGGCA TTACCTACAT TTAAAAAAAA TGTGTGTGCA TGTGTGTGTG
  TGTGCGTGTG TGTGCGTGCT GCCTTGTCTC ACCTCAGTGG AAGAGGATGT GCCTAGCCTT
  GCAGAGATTT GAAGTGCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136041692	ENSMUSSNP6487788	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321009458	CHEV_3_145723254	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47724885					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145766045 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr586914	regulatory region 586914			1624 bp distal
Rr586915	regulatory region 586915			1913 bp distal
Rr586916	regulatory region 586916			1430 bp distal
Rr586917	regulatory region 586917			556 bp distal