rs47725685 SNP Detail

Summary

• ID
  rs47725685
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19487821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA ATGACAAGCC AGTGGCATAG
  W
  GTAATCCTGG GGAATAAACA GATGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148742677	ENSMUSSNP4573728	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss324277948	CHEV_13_19395520	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47725685					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19487821 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	1409 bp downstream
Tssr118532	transcription start site region 118532	1472 bp upstream
Tssr121559	transcription start site region 121559	727 bp downstream
Tssr121560	transcription start site region 121560	786 bp downstream
Tssr121561	transcription start site region 121561	1337 bp downstream