rs47727063 SNP Detail

Summary

• ID
  rs47727063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55474554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA CTGCCCGTTA GTAGCCTTCC
  S
  CTCTAGACAC ATGCCTGGCT CTTTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss146361436	ENSMUSSNP4371079	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
ss321127969	CHEV_4_55487426	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs47727063					SNP	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55474554 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Gm68870	predicted gene, 68870	1614 bp downstream
Rr376520	regulatory region 376520	within coordinates
Rr592486	regulatory region 592486	23 bp distal
Tssr41779	transcription start site region 41779	825 bp downstream