rs47727641 SNP Detail

Summary

• ID
  rs47727641
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:50362352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTGTGT ATTGTGTGAT
  AGAAGAAAAA TATTTCTATT AAAAATAACT AGCAAAATAG CCCCGACATG CCGCTTGAAG
  CACCTGGGCA GCTCAGACAT GAACTTCCTA AACCATGAAA AACAAGACAA CAAAGAGGAT
  GGAAGACAGG GAGGAAAAAG TCATCAAAGG AAAGCAGCGA GAAACCGAGA AACTGGTGTG
  K
  ACTGGATCAG AGGTGAGAAG CCCTGTTGGA GCTGCAGCGT TCTGTGCTTA CAATACTGGG
  AACAGCGAGC CCAGCCTGGC GTTGCCCCTG TTAGGCCAAT GCTCTGCAAT TGCTCAGGCT
  GAGTCCCCAG CCAAAAAAAG CATTGTTTGT GAGCAAACTG AAGTGTTAGA CTTAAGCACT
  AGAGAGCTGG TGCAGCATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60212604	NES15723113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47727641					SNP	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60212604	NES15723113	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:50362352 () rs orientation: forward

Symbol	Name	Function Class
G730013B05Rik	RIKEN cDNA G730013B05 gene	within coordinates
Gm60707	predicted gene, 60707	826 bp downstream
Rr318669	regulatory region 318669	649 bp proximal
Rr323833	regulatory region 323833	679 bp proximal