rs47728050 SNP Detail

Summary

• ID
  rs47728050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123365778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGGGAG TGGGGGGTTA
  GAGGGTGTCT GTGATCATGA CAATAAGAAA TAGAATATTC TAAAAACTTG GGGAGAGCTT
  CAAGGTCGCC TTCATCTACA CAATGAGTTA GAGGCCTGCC TGAGATGCAG TAAATCTTGT
  CTGGAAAAAG AAAAAGAAAA GAAACAGAAA ACAAAAAACA AATCGCTTGA AAGCCTCTTT
  Y
  AAACACTCAG GGGCTTCGTA GATGTTAAGA ACTGAAGTGT CAAGGTTGGC AAGACTGGAT
  CCTCTTACAT TTATACAGCT GGTATCCAGT TTACTCAGCC TTCAGATGAG TGAATGAAAA
  AAAGTGTAAG CCAGATGTGG TGGCTTTAAT CCCAGCACTT GGGAGCAGAG GCAGGAGGAT
  TTCTGAGTTT GAGGCCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834934	NES16023949	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47728050					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834934	NES16023949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123365778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	389 bp proximal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	475 bp upstream
Rr399344	regulatory region 399344	356 bp upstream
Tssr48774	transcription start site region 48774	501 bp upstream
Tssr48775	transcription start site region 48775	523 bp upstream