rs47728806 SNP Detail

Summary

• ID
  rs47728806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGGCTAGT ACTGGGGGGG CGAAGGTGGG
  GGGTGCAGAG GAGTCCATAT CCCTTCCCAG GAGAGGCAGG CTAAGCTTGT CAACATTGGA
  AAGGTTTCCC TGGGACCCAC TATGTTCCTG CCAGTGTGGC CCTTGCTTCA CCCCAACCTG
  Y
  CCTTAGGGAT GGCTCTTGTT CAGAGCCTTC ACATTGTAGG TGGCTTTTCT GACTTCTGGG
  ATAGTGAGGG ATTGTTCAGG ACGTAATTGC TTCGAGTGTA AGACATTTCC AGCGCATTCT
  ACAGGGTGTC CGGCTGGGAA GTCACCTGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145547994	ENSMUSSNP1368390	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319993832	CHEV_1_137733808	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47728806					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764969 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	808 bp distal
Rr419295	regulatory region 419295	499 bp distal
Rr419296	regulatory region 419296	within coordinates
Rr419297	regulatory region 419297	518 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	835 bp downstream
Tssr9006	transcription start site region 9006	1179 bp upstream
Tssr9007	transcription start site region 9007	1676 bp upstream