rs47732302 SNP Detail

Summary

• ID
  rs47732302
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66903923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG TTTCTTTGTA TTGCGCAGAC
  G
  ACTGTCCCAA ACTTCTGCAC ATTTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520421	ENSMUSSNP5063969	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss319758758	CHEV_1_66911338	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47732302					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66903923 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1487 bp upstream
Cpgi339	CpG island 339	1025 bp distal
Rr412478	regulatory region 412478	1498 bp distal
Rr412479	regulatory region 412479	997 bp distal
Rr412480	regulatory region 412480	968 bp proximal
Tssr12011	transcription start site region 12011	1505 bp upstream
Tssr12012	transcription start site region 12012	1479 bp upstream
Tssr12013	transcription start site region 12013	1467 bp upstream
Tssr12014	transcription start site region 12014	1449 bp upstream
Tssr12015	transcription start site region 12015	1429 bp upstream
Tssr12016	transcription start site region 12016	1414 bp upstream