rs47732350 SNP Detail

Summary

• ID
  rs47732350
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77859755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGCAGT GGTGGTGCAC
  GCCTGTAATC CCAGCACTTG GGAGTCGGAG CAGGCAGATT TCTGAGTTTG AGGCCAGCCT
  GGTTTACAGA GTGAGTTCCA GGACAGCCAG GGCTACACAG AGAAACCCTG TCTCGAAAAA
  ACAAAAACAA GAACAAACAA ACAAAAAAAG AATGATGGCC TTCTAGTCAA ACTCCAGCTC
  W
  GGGGCGTGGG GATTACATGT GTCTACCAAC ACAGGTGGCT CTTGTGTGGT TTTCCTTTTC
  CCCCACACTG ATGGTGCTGA CACAAGGGCA GTCTGGATGG TAGGTTTTCG ATTGATAGTC
  CTTTCATTCA AAGCAGCCAG TGCAGCCAGA AAGAGACCAA CAGCTGGCTG GTCAGGAGTC
  AGTTGCTATG GCTGTCACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555313	ENSMUSSNP2169820	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47732350					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77859755 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	1713 bp upstream
Cpgi10281	CpG island 10281	1588 bp proximal
Gm52331	predicted gene, 52331	1844 bp downstream
Haus1	HAUS augmin-like complex, subunit 1	within coordinates
Rr393942	regulatory region 393942	1181 bp upstream
Rr541176	regulatory region 541176	1184 bp proximal
Rr541177	regulatory region 541177	1685 bp proximal
Rr541178	regulatory region 541178	1821 bp proximal
Rr541179	regulatory region 541179	1912 bp proximal
Tssr152041	transcription start site region 152041	1929 bp upstream