rs47733040 SNP Detail

Summary

• ID
  rs47733040
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119983159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT GTTTACGAGT CAGGCTACAG
  W
  CAGAGGAATG CACTGTCTTC AGGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147352718	ENSMUSSNP6671472	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47733040					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119983159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12137	CpG island 12137			1092 bp proximal
Ehd4	EH-domain containing 4			Intron
				Noncoding-Transcript-Variant
Rr397238	regulatory region 397238			1845 bp upstream
Rr563647	regulatory region 563647			1587 bp distal
Rr563648	regulatory region 563648			1909 bp proximal
Rr563649	regulatory region 563649			1918 bp proximal
Tssr25838	transcription start site region 25838			1808 bp downstream
Tssr25839	transcription start site region 25839			1834 bp downstream
Tssr25840	transcription start site region 25840			1922 bp downstream