rs47733321 SNP Detail

Summary

• ID
  rs47733321
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCTGAGT GCTGGGATAA AGGCATGGAC TTGCCCAGCC
  AAGCCTGATT TTTTTTTTTT TTTGTATGCA TGGAGGCATC AGAATATTTT GTTTTAGATA
  T
  CCTAAGTCCC TACTTCTGCT GGTGTGTCTC TGTACTCGCA GTGACCATGC CAGGCAAACG
  CAATCCAAAC CACACGGTCC TAAGCCCCAG ACCTATGCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548350	ENSMUSSNP5457845	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47733321					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777879 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	522 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	696 bp upstream
Tssr9020	transcription start site region 9020	1293 bp downstream
Tssr9021	transcription start site region 9021	1273 bp downstream
Tssr9022	transcription start site region 9022	785 bp downstream
Tssr9023	transcription start site region 9023	711 bp downstream
Tssr9024	transcription start site region 9024	675 bp downstream
Tssr9025	transcription start site region 9025	385 bp downstream
Tssr9026	transcription start site region 9026	187 bp downstream
Tssr9027	transcription start site region 9027	69 bp downstream
Tssr9028	transcription start site region 9028	31 bp downstream
Tssr9029	transcription start site region 9029	536 bp upstream
Tssr9030	transcription start site region 9030	571 bp upstream
Tssr9031	transcription start site region 9031	630 bp upstream
Tssr9032	transcription start site region 9032	1213 bp upstream
Tssr13894	transcription start site region 13894	1288 bp upstream
Tssr13895	transcription start site region 13895	1244 bp upstream
Tssr13896	transcription start site region 13896	717 bp upstream
Tssr13897	transcription start site region 13897	689 bp upstream
Tssr13898	transcription start site region 13898	596 bp downstream
Tssr13899	transcription start site region 13899	664 bp downstream
Tssr13900	transcription start site region 13900	674 bp downstream
Tssr13901	transcription start site region 13901	1235 bp downstream