rs47733582 SNP Detail

Summary

• ID
  rs47733582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61902447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGGGAAA TGAATCAGCA
  TTTCCAGGAA CTGACCCTTG TGTGGATCCC AGAGGGTTTG AGAAATCAAG GAGATGCCAG
  CGACTGATCC TCCTCTGACG TCTCCTGCTA CTGTTGGAGG GTCTCCTGGA AGCCTGGGCT
  TTTAACACAG ACCTGCTCAC ATCCTAGTCT GAAGTAGGCA CCTTGTATGA AATACCAGCA
  Y
  CTACTTGTGT GCGTGCATGC ATGTGTACGT ACGTGCATGT GAGGACGGAT GTCAGAGGAT
  AACTTTCTGG TACCAGTTCT CTCTTTCTCC TGTCTGGGTT CTGGGGTTTA AACTTGGTGG
  CAAGTACCTT TACCGGACAA TCCATCTCCC CAACTGTCAT GGTTTGAATA TGCTTGGCCC
  AGGTAGAAGG TGTGGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61280105	NES16886530	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47733582					SNP	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280105	NES16886530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61902447 () rs orientation: forward

Symbol	Name	Function Class
D10Mit149	DNA segment, Chr 10, Massachusetts Institute of Technology 149	460 bp proximal
Tssr93687	transcription start site region 93687	29 bp downstream