rs47734853 SNP Detail

Summary

• ID
  rs47734853
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76562489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTTAG TTAAATACTT
  AACTTGCAAA AGATATTTGA TCTTTCGATC TTTATTATGG AAATCCAAGT TGTCAACACT
  AACCACATGG ATGTATTTGT ATAAGAGTCT CTTTTTATTT CTGTTTCTCT CTGTGTGTCT
  CTGTGTGTGT GTTGATAACA TCTGGGCTCC AGATAAAGCC AGAACCATCC TTACCCAGAG
  M
  AAATTCCAGA AGAGTGGTAT AGTCATTATA ATACAAAAAC TTGGTTACAA ATTTCAGCAT
  CATTAATAAT AAAAGTCTGT AAAGAAAAGT GACAGTGACT CCTAGGACTC AGTGAGACTG
  TGTCCTTTGT CCTCCTCATG CCAGCCCTAC AGTATATGTC ACCATGGTGG ACACATGTTC
  TTCCTGGCAG TAATCTCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288889	NES16903825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47734853					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288889	NES16903825	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76562489 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	620 bp upstream
Gm48276	predicted gene, 48276	within coordinates
Tssr3254	transcription start site region 3254	703 bp upstream
Tssr3255	transcription start site region 3255	410 bp upstream
Tssr3256	transcription start site region 3256	369 bp upstream
Tssr98207	transcription start site region 98207	605 bp upstream