rs47734892 SNP Detail

Summary

• ID
  rs47734892
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52315473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGAGG AGAGAAGACG
  GGAAGGGGGG AGGGGAGAGG AGAGGAGAGA GGAGAAGAGG AGAGGAGGAG GGAAGGGGAG
  AGGGGAGAGG AAGGAGAAGA GATTAACTCA AGATACAACC AGAGCATAAC AACAGGATTA
  CTGGTTTTAG TCACCTCTTT TCCTTTTTAT GTTATTCAAA ACTCAATTTG ATGAAAAATG
  S
  TGCAAGAGGA AAGAGCCCCC CCTCACACAT ACAGTAAATG ATAGGCTTGA CTAGACTTAA
  AAAATGGACT GTTTCCAGTT TATGGAAATT TTAAGAGAAT GTAAGTTAGA ATGAATTGCT
  TTTACCTTAT ACTTAAACAA TTCACATAAA GTCAACTACA ACAAAAAGGT GTTCTGATTT
  TATTCAAGTT CTAGATATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52719794	NES15554384	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	C	C	C	G		C	C	G	G		C
ss139500774	ENSMUSSNP3371560	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					C
ss324627166	CHEV_14_52697691	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47734892					SNP	G	G	G	G	G	G	C	C	C	G	G	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52719794	NES15554384	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52315473 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	1128 bp proximal
Tssr128488	transcription start site region 128488	14 bp downstream
Tssr128489	transcription start site region 128489	1510 bp downstream