rs47735538 SNP Detail

Summary

• ID
  rs47735538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32753002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGAGG CCCTCACATG
  CTGGTCATGT GCTCTGCCAC TGAGCTGTGC GCCCATCCCA GGCACTTCTA GTTTTGATAA
  GGTGTGCCAG TGAGAAGGGA CAGCCAATAG TCCTGAGGTT TCTTGCTCTT TAATCCTACT
  AGTATCAGTA ACATTGACTG AGGCCTGGGG AAGACTGTAG ACAGAAATCA GGCTTTAGGG
  R
  AGAAATAGCC ATGCAGAAAC ATCTTGCAGC CTTCAGATAG TCTCCAGGAT TCTGTGGTGT
  GCTGGGAATC AGACCCAATA ATTTTATTTT TTTAATTCAT TATATAGTAA GTAGTTTTCT
  AAATTTTAAA GACATATTTT TTTTTGGTAT ATAGATGCTT TCCCTGCTTG TATGTCTGTG
  CACCATGTAT GTGAAGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60384444	NES15878110	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47735538					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384444	NES15878110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32753002 () rs orientation: forward

Symbol	Name	Function Class
Rr374790	regulatory region 374790	1272 bp upstream
Rr575012	regulatory region 575012	787 bp distal
Rr575013	regulatory region 575013	122 bp distal
Rr575014	regulatory region 575014	436 bp distal