rs47735584 SNP Detail

Summary

• ID
  rs47735584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51633284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTAAAT GCATACGTCA
  AACCTTATGA CACTCTACAC TTTAAGTATG TGACATTTAC TATGCAATTC AGTCTCAACA
  AAGTTATCGA AAGAAAAGAA AGGAAACAGA CAAGGAGCTG GGGGAGTTTG GAGATCTGCA
  AAGATAGCTG GATGGAAAAT CTAACTGCAG AAGATGACTC AGAGGACAGG AAGAAGGTGG
  R
  GCTCCTGGCC AGAGCAGAGG ATGCATAAAC GCAGAAGGGT CTGCCGGCAT CCTAACTGCT
  CCTCTTCAAA GGCCAGAGAA GCAATCTGGA AGCTATAAAA GCAAAGCCCA GGCTGTGGTC
  TGCACAAGCT GAACAACAGA AGGCCTTGCT GGCTGCCCAG CCATCAGCTT TGGCTGCCAA
  TATCGCCATA GATGCTGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149111941	ENSMUSSNP5323368	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47735584					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51633284 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	within coordinates
Rr410724	regulatory region 410724	within coordinates
Tssr6634	transcription start site region 6634	127 bp downstream
Tssr6635	transcription start site region 6635	45 bp upstream
Tssr6636	transcription start site region 6636	123 bp upstream