rs47735909 SNP Detail

Summary

• ID
  rs47735909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178285364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGGCTGT GTTTGGATGG
  ATGGCGTGCA CAGCTGAGAA GGACAGCAAA CCCCAGGGGA TCCGGGAGGC ACTGCCTGGC
  CCTGCCCAGC AAGAATTAGG AAACCTAAAT ACCAGATGGC ATCCTATTTG GGGGTTCTTG
  CTAAAATCAA CCCAAGAAAA GACAGGACCT AGTACCCTGA TATTTCTGCC ATTTCCAGGA
  R
  GCTTCCAGTC TTCCTGTTCA CCTGTGACTT GATCCTCCAG CTTCCAGGTG ATGACCATGG
  TATTTGCAAC CCCACACAGC CCTCAAGGCT GGTCTTGTGG GCATCTCTTA GCTCTTGGGT
  GTGGAACAGC CCCTTCGGTG GGCTCTCAAG TTTACTTGCG CAGTTTGGTT CACAGACCAC
  TGGAAACTTG GTTGACTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148366905	ENSMUSSNP4525275	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320628621	CHEV_2_178378276	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47735909					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178285364 () rs orientation: forward

Symbol	Name	Function Class
Rr572444	regulatory region 572444	1187 bp distal
Rr572445	regulatory region 572445	114 bp distal
Rr572446	regulatory region 572446	199 bp proximal