rs47736796 SNP Detail

Summary

• ID
  rs47736796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89604061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTGAGA ATGTGAAATA
  AAGGTGGGAG ACTGCCTTTA TGTCTGCAAT TTTGAAGCTG ACCCAGGGGC TGCCTGCTGA
  GTCCAACCCT AGCACACCCT GGGATTTTTG GTTTTGGAGA CTGAGTTTGA ACTTGCTTCA
  GTAGCATATC TCAAGGTTAT ATGTATCCCC AGACACTTAC AAAGGCGCTT TCAGGGCTGC
  R
  TATGGCACCA CCGCTTACAT AATTCATCTA TTCACTAGTA CCTATTTTTC TAAGATTTGG
  TAGTCTCCAC TCAGGACTTA TAGCTGTAGT AAGCATATGC AGATGAATAA AAATGAATTT
  AACATAATTT AAATAACAAA ATAACTCACA TAAAAATGTG AATGCAGGGA CTAGAGAGAT
  GGTTCGGTGG TTAAGAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194473	NES16707136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47736796					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194473	NES16707136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89604061 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	284 bp distal
Rr614259	regulatory region 614259	467 bp distal
Rr614260	regulatory region 614260	1686 bp proximal
Tssr51725	transcription start site region 51725	1561 bp downstream