rs47739583 SNP Detail

Summary

• ID
  rs47739583
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25759075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG AGGTTGAGAC ACAGCAGTCG
  S
  AGTTAGAGCC TCAGAGGTCA GCTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52193813	NES15225017	PERLEGEN	MM_PANEL2	f	SNP		C	G		C	C		C
ss147013877	ENSMUSSNP6075366	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323277633	CHEV_10_25602983	CHEVERUD	SCREENING_POP	f	SNP				C			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47739583					SNP	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193813	NES15225017	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25759075 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	496 bp upstream
Gm66740	predicted gene, 66740	201 bp upstream
Rr218979	regulatory region 218979	75 bp distal
Rr218980	regulatory region 218980	126 bp proximal