rs47740403 SNP Detail

Summary

• ID
  rs47740403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30330613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGTTCG GTCCATATCT
  GGCTAGACCT GTAATATCCT CAACACGCTC CCCCAAATAG GAACAACAGG TGCCTCTAAG
  AGGGAAGGAG CCTGGGGCTG GGGTAGGAGC ACAGCACTTT GGGATGCATA CCCTGCCTTT
  TCAACACTAA TCGGTGGGGA GAGTTAGCTG CAAGAGTCAG ATAACTGCCT TCGGGACTGA
  Y
  GAGGTATCAG ACTTCGGTGT CTCCATACTT TGTGTACTGG AGAAATGCTG GACAAACTGT
  CACTGCGCTG CATCCCCAAT TCTACCTTTA CATTTTTAAA GTTTGAGGCA GGGTCTTGTT
  GTTAAGTTAC CCAGCAGGTC ATGAACTTGT AACCTTGCTG CTTGAGAGTC CCGAGGACAC
  AGGATTAGAA ACCCAGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709019	NES15548875	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47740403					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709019	NES15548875	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30330613 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	within coordinates
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	812 bp distal
Rr292185	regulatory region 292185	within coordinates
Rr404042	regulatory region 404042	606 bp downstream
Tssr4363	transcription start site region 4363	882 bp upstream
Tssr124839	transcription start site region 124839	733 bp downstream
Tssr127872	transcription start site region 127872	1943 bp upstream
Tssr127873	transcription start site region 127873	852 bp upstream
Tssr127874	transcription start site region 127874	835 bp upstream
Tssr127875	transcription start site region 127875	832 bp upstream
Tssr127876	transcription start site region 127876	489 bp downstream