rs47741412 SNP Detail

Summary

• ID
  rs47741412
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152584627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATACACTG TTGTAGTTTT
  GTGGTTTCTC AAAGATTTGA CTATCAGCTG ACAATACTAT CTGGGAATCC CACTTGAAGA
  TGTAAGGCCC AAAGATGGCA CGGGCTTACA GAGACACTTG CAGATCAGTA GCAGTGGCAA
  TGTTTTCTTC AACAGCCAAA CGGAGAGAAT AAGTGCAGTG TCCATGGTGG ATAAGGAACA
  G
  TATGTGCGTG CCCCAACAGT GGTGCACATC TGGGCTTAGA CAGAAAGGAC ACTCAGATAT
  CACCCTGCCA CATGTATGAA CTCTGGAACC ATGTTAAATA AAGCAATCCT GAAGCAGAAA
  GACAAATACT GTATCAGCTT CCTCCTCTTC CTCCTCCTTC TCCACTGAGG GACCCAGAAC
  AGTCAAAGTC ACAGAGATTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136104261	ENSMUSSNP3928520	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321029020	CHEV_3_152541954	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47741412					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152584627 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	574 bp proximal
Rr79922	regulatory region 79922	974 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates