rs47741979 SNP Detail

Summary

• ID
  rs47741979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110949810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGCTCTT TTTACAGCCT
  TTGTGTCATG AAGGCAAAGG GGCAAAGGTT CCAAGGCCAA GAGGGCACTT GGAGTCTCCG
  AAGCGAAGTC TCTGACGTCC TCTCCTGGCT GGGGGTTCCC AGAGGCCGCA AGCAACTTGA
  TCCCATTTCT CACCTGCTCA GAAGCAGTGT CTGCACAGGC CCTTAGCCAA AAAGTCCAGA
  Y
  GAAAATGTTC GGGGGAACCT GTGCTATGGA GCAGTGGGAG AGGCTCAGAG GTCAGTGGGC
  CACAGCCAGT CCCTGGGCCA TACCTGCTGA GGCAGGAGCT TGGATGTGTG CTGCAGTCAT
  GAGGTGCAGA TAGGGGGGAG GAAGTTATTT TGCTTGTGAG ATAGTCAGGC ATACACACAC
  ACACACACAC ACACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61718138	NES17662592	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47741979					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718138	NES17662592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110949810 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	1998 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	1998 bp downstream
Rr473047	regulatory region 473047	1305 bp distal
Rr473048	regulatory region 473048	within coordinates
Rr473049	regulatory region 473049	1181 bp proximal