rs47742240 SNP Detail

Summary

• ID
  rs47742240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATTCA ATGCCCAGAC
  ACCACGTAAG AGAAGCTGTC CTTGCTCAAA GTTCCAGCTC TGGTGAAGTA GAGACAAGCA
  GATCTCTAGG GTTTTCTGGG CAGCGAGCCT TGCATATTTC ACAAGTTCCA GGACAGTGAG
  AAGCCCTGTG TTACAATAAA ACAATGACAT CTGAGGAATG GCACTCAGGG TTGTCCTGTG
  R
  TCACTACATA CTTTTAACCC TCCCAGGGCG AATGCACTAA GAATCTATGA TGGGGATGGG
  GGAGGTGGAG GTACAGGCTA TGACATGTTT CTTACCATAA CCCTAACCAT TTGAACTTAA
  CAGTTATCTG CAAAAGTTTC ATTTACAAAG GAATCCATGC TGGCACAGAA ACAAAGTTCT
  AGGTAGCATA CAAACTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148811312	ENSMUSSNP2869874	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324295910	CHEV_13_24467431	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47742240					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559545 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	488 bp upstream
Tssr118892	transcription start site region 118892	472 bp upstream
Tssr118893	transcription start site region 118893	508 bp upstream
Tssr118894	transcription start site region 118894	572 bp upstream
Tssr118895	transcription start site region 118895	606 bp upstream
Tssr121784	transcription start site region 121784	380 bp downstream
Tssr121785	transcription start site region 121785	400 bp downstream
Tssr121786	transcription start site region 121786	460 bp downstream